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    PIT1 RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828146, updated on 18-Sep-2024

    Summary

    Official Symbol
    PIT1
    Official Full Name
    RING/FYVE/PHD zinc finger superfamily protein
    Primary source
    TAIR:AT4G02075
    Locus tag
    AT4G02075
    See related
    Araport:AT4G02075
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    pitchoun 1
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    Genomic context

    See PIT1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (913334..916509, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-His Neighboring gene Minichromosome maintenance (MCM2/3/5) family protein Neighboring gene MUTS homolog 6 Neighboring gene secretion-associated RAS super family 2 Neighboring gene multidrug resistance protein ABC transporter family protein

    General gene information

    NM_001340359.1
    NM_001340360.1
    NM_116439.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding  
    Component Evidence Code Pubs
    located_in Golgi apparatus  
    located_in cytoplasm  
    located_in plasma membrane PubMed 

    General protein information

    Preferred Names
    RING/FYVE/PHD zinc finger superfamily protein
    NP_567222.1
    • pitchoun 1 (PIT1); FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G02610.1); Has 1559 Blast hits to 1554 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 678; Fungi - 105; Plants - 585; Viruses - 28; Other Eukaryotes - 163 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      913334..916509 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116439.3 → NP_567222.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567222.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XP42, A0A654FL29, Q9XF50
      Conserved Domains (3) summary
      smart00744
      Location:20 → 65
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      cd16495
      Location:20 → 65
      RING_CH-C4HC3_MARCH; RING-CH finger (C4HC3-type) [structural motif]
      pfam12428
      Location:72 → 176
      DUF3675; Protein of unknown function (DUF3675)
    2. NM_001340360.1 → NP_001329351.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7F7, A0A5S9XP42
    3. NM_001340359.1 → NP_001329350.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7F8
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