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    AT14A transmembrane protein, putative (DUF677) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822455, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AT14A
    Official Full Name
    transmembrane protein, putative (DUF677)
    Primary source
    TAIR:AT3G28290
    Locus tag
    AT3G28290
    See related
    Araport:AT3G28290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.
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    Genomic context

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    See AT14A in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (10547441..10549401)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box/associated interaction domain protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of a cDNA clone from Arabidopsis thaliana with partial sequence similarity to integrins. Nagpal P, et al. Gene, 1999 Apr 1. PMID 10196471
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_113748.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in membrane HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF677)
    NP_189469.1
    • AT14A; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G28300.1); Has 228 Blast hits to 220 proteins in 54 species: Archae - 6; Bacteria - 60; Metazoa - 5; Fungi - 4; Plants - 134; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10547441..10549401
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113748.5 → NP_189469.1  transmembrane protein, putative (DUF677) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189469.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0DI78, P0DI79, Q56XE6, Q8GXJ7, Q9XF11
      UniProtKB/TrEMBL
      A0A178VA98
      Conserved Domains (1) summary
      pfam05055
      Location:28 → 380
      DUF677; Protein of unknown function (DUF677)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DI78.1
    P0DI79.1

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