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    hAT transposon superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820489, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hAT transposon superfamily protein
    Primary source
    TAIR:AT3G13030
    Locus tag
    AT3G13030
    See related
    Araport:AT3G13030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MGH6.16
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (4169541..4172122, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hAT transposon superfamily protein Neighboring gene hAT transposon superfamily protein Neighboring gene myb-like HTH transcriptional regulator family protein Neighboring gene Major facilitator superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001035608.2
    NM_001161140.1
    NM_001338020.1
    NM_112140.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hAT transposon superfamily protein
    NP_001030685.1
    • hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001154612.1
    • hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 625 Blast hits to 607 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_187909.1
    • hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 625 Blast hits to 607 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4169541..4172122 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338021.1 → NP_001326385.1  hAT transposon superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LP43

    2. NM_001035608.2 → NP_001030685.1  hAT transposon superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030685.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMD6, A0A384LQ23, Q9LDS0
      Conserved Domains (2) summary
      pfam04937
      Location:91 → 240
      DUF659; Protein of unknown function (DUF 659)
      pfam05699
      Location:458 → 526
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    3. NM_001338020.1 → NP_001326386.1  hAT transposon superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMD6, A0A384LQ23, Q9LDS0
      Conserved Domains (2) summary
      pfam04937
      Location:91 → 240
      DUF659; Protein of unknown function (DUF 659)
      pfam05699
      Location:458 → 526
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    4. NM_112140.4 → NP_187909.1  hAT transposon superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187909.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMD6, A0A384LQ23, Q9LDS0
      Conserved Domains (2) summary
      pfam04937
      Location:91 → 240
      DUF659; Protein of unknown function (DUF 659)
      pfam05699
      Location:458 → 526
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    5. NM_001161140.1 → NP_001154612.1  hAT transposon superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154612.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMD6, A0A384LQ23, Q9LDS0
      Conserved Domains (2) summary
      pfam04937
      Location:91 → 240
      DUF659; Protein of unknown function (DUF 659)
      pfam05699
      Location:458 → 526
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    Nucleotide Protein
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