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    Ubiquitin fusion degradation UFD1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817455, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin fusion degradation UFD1 family protein
    Primary source
    TAIR:AT2G29070
    Locus tag
    AT2G29070
    See related
    Araport:AT2G29070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9I4.15; T9I4_15
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (12487248..12489613)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene GRAS family transcription factor Neighboring gene GRAS family transcription factor Neighboring gene FTSH protease 3 Neighboring gene cytochrome P450, family 707, subfamily A, polypeptide 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001336197.1
    NM_128464.3
    NM_201828.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ubiquitin fusion degradation UFD1 family protein
    NP_180471.2
    • Ubiquitin fusion degradation UFD1 family protein; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 693 Blast hits to 691 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 203; Plants - 125; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
    NP_973557.1
    • Ubiquitin fusion degradation UFD1 family protein; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12487248..12489613
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_201828.4 → NP_973557.1  Ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973557.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VX30, O81075, Q6NLS0
      Conserved Domains (1) summary
      pfam03152
      Location:8 → 178
      UFD1; Ubiquitin fusion degradation protein UFD1

    2. NM_128464.3 → NP_180471.2  Ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180471.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IJQ6, O81075
      Conserved Domains (1) summary
      pfam03152
      Location:1 → 146
      UFD1; Ubiquitin fusion degradation protein UFD1

    3. NM_001336197.1 → NP_001325410.1  Ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B338
    Nucleotide Protein
    Heading Accession and Version

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