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    Translation initiation factor 3 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816940, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Translation initiation factor 3 protein
    Primary source
    TAIR:AT2G24060
    Locus tag
    AT2G24060
    See related
    Araport:AT2G24060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T29E15.26; T29E15_26
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (10229350..10231856)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Low temperature and salt responsive protein family Neighboring gene MIF4G domain-containing protein / MA3 domain-containing protein Neighboring gene QWRF motif protein (DUF566) Neighboring gene F-box protein (DUF295) Neighboring gene Ribosomal protein L35

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chloroplast Translation Initiation Factors Regulate Leaf Variegation and Development. Zheng M, et al. Plant Physiol, 2016 Oct. PMID 27535792, Free PMC Article
    2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_127968.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables translation initiation factor activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Translation initiation factor 3 protein
    NP_179984.1
    • Translation initiation factor 3 protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, N-terminal (InterPro:IPR019814), Translation initiation factor 3, conserved site (InterPro:IPR019813), Translation initiation factor 3, C-terminal (InterPro:IPR019815), Translation initiation factor 3 (InterPro:IPR001288); BEST Arabidopsis thaliana protein match is: Translation initiation factor 3 protein (TAIR:AT4G30690.1); Has 20358 Blast hits to 11134 proteins in 2694 species: Archae - 56; Bacteria - 8982; Metazoa - 2020; Fungi - 711; Plants - 802; Viruses - 337; Other Eukaryotes - 7450 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10229350..10231856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127968.3 → NP_179984.1  Translation initiation factor 3 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179984.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82234
      UniProtKB/TrEMBL
      A0A178VSM6, A0A5S9X0Z7
      Conserved Domains (1) summary
      PRK00028
      Location:95 → 252
      infC; translation initiation factor IF-3; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82234.1

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