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    ATRER1C1 Rer1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816863, updated on 18-Sep-2024

    Summary

    Official Symbol
    ATRER1C1
    Official Full Name
    Rer1 family protein
    Primary source
    TAIR:AT2G23310
    Locus tag
    AT2G23310
    See related
    Araport:AT2G23310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRER1C; T20D16.6; T20D16_6
    Summary
    Encodes AtRER1C1, a Golgi membrane protein involved in returning the molecules that are exported from the endoplasmic reticulum (ER) to the Golgi apparatus back to the ER (a mechanism known as retrieval). There are two Arabidopsis homologues of AtRERC1: AtRER1A and AtRER1B.
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    Genomic context

    See ATRER1C1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (9917443..9919379)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene myb domain protein 70 Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ncRNA Neighboring gene WRKY DNA-binding protein 15

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_127895.4
    NM_179708.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Rer1 family protein
    NP_565550.1
    • ATRER1C1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: maintenance of protein location; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: Rer1 family protein (TAIR:AT4G39220.1); Has 510 Blast hits to 509 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 146; Plants - 129; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
    NP_850039.1
    • ATRER1C1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: maintenance of protein location; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: Rer1 family protein (TAIR:AT4G39220.1); Has 509 Blast hits to 509 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 147; Plants - 127; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9917443..9919379
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127895.4NP_565550.1  Rer1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565550.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22177, Q9ZWI7
      UniProtKB/TrEMBL
      A0A178VSQ0, A0A5S9X0Q2, A0A654EVF0
      Conserved Domains (1) summary
      pfam03248
      Location:39202
      Rer1; Rer1 family
    2. NM_179708.1NP_850039.1  Rer1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850039.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUC1, F4ILI9
      Conserved Domains (1) summary
      pfam03248
      Location:41201
      Rer1; Rer1 family