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    DUF2996 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814937, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DUF2996 family protein
    Primary source
    TAIR:AT2G04039
    Locus tag
    AT2G04039
    See related
    Araport:AT2G04039
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3L12.11; F3L12_11
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (1333133..1334566)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene phosphogluconate dehydrogenase (decarboxylating), NAD-binding domain protein Neighboring gene basic leucine-zipper 48 Neighboring gene MATE efflux family protein Neighboring gene MATE efflux family protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The NdhV subunit is required to stabilize the chloroplast NADH dehydrogenase-like complex in Arabidopsis. Fan X, et al. Plant J, 2015 Apr. PMID 25728844
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084408.1
    NM_126442.4
    NM_179602.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF2996 family protein
    NP_001077877.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_565308.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
    NP_849933.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 157 Blast hits to 157 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1333133..1334566
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126442.4 → NP_565308.1  DUF2996 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565308.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E5A5, Q93Z84
      Conserved Domains (1) summary
      pfam11210
      Location:95 → 191
      DUF2996; Protein of unknown function (DUF2996)

    2. NM_001084408.1 → NP_001077877.1  DUF2996 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077877.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MR59
      Conserved Domains (1) summary
      pfam11210
      Location:95 → 161
      DUF2996; Protein of unknown function (DUF2996)

    3. NM_179602.1 → NP_849933.1  DUF2996 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849933.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IUA0
      Conserved Domains (1) summary
      pfam11210
      Location:61 → 157
      DUF2996; Protein of unknown function (DUF2996)
    Nucleotide Protein
    Heading Accession and Version

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