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    Plant protein 1589 of unknown function [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841393, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plant protein 1589 of unknown function
    Primary source
    TAIR:AT1G49700
    Locus tag
    AT1G49700
    See related
    Araport:AT1G49700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14J22.9; F14J22_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (18388792..18390523, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Arg Neighboring gene miscRNA Neighboring gene fucosyltransferase 12 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis TRANSCURVATA1 encodes NUP58, a component of the nucleopore central channel. Ferrández-Ayela A, et al. PLoS One, 2013. PMID 23840761, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plant protein 1589 of unknown function
    NP_001154413.2
    • Plant protein 1589 of unknown function; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07675.1); Has 180 Blast hits to 180 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    NP_175392.5
    • Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07675.1); Has 177 Blast hits to 177 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18388792..18390523 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160941.2 → NP_001154413.2  Plant protein 1589 of unknown function [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154413.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I3C5
      Conserved Domains (1) summary
      pfam09713
      Location:18 → 67
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)

    2. NM_103857.5 → NP_175392.5  Plant protein 1589 of unknown function [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175392.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I3C6
      Conserved Domains (1) summary
      pfam09713
      Location:18 → 67
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)

    3. NM_001333398.1 → NP_001322681.1  Plant protein 1589 of unknown function [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAH6, A0A1P8AUS7, A0A5S9WKV3, A0A654EIF0, A0A7G2DWH3
      Conserved Domains (1) summary
      cl09915
      Location:11 → 68
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)

    4. NM_001333399.1 → NP_001322682.1  Plant protein 1589 of unknown function [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUP3, A0A7G2DWL5
    Nucleotide Protein
    Heading Accession and Version

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