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    Pentatricopeptide repeat (PPR-like) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843487, updated on 18-Sep-2024

    Summary

    Official Full Name
    Pentatricopeptide repeat (PPR-like) superfamily protein
    Primary source
    TAIR:AT1G71460
    Locus tag
    AT1G71460
    See related
    Araport:AT1G71460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26A9.16
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (26927984..26930347, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene tubulin folding cofactor E / Pfifferling (PFI) Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene uncharacterized protein Neighboring gene Nuclear transport factor 2 (NTF2) family protein Neighboring gene ncRNA

    General gene information

    NM_105815.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Pentatricopeptide repeat (PPR-like) superfamily protein
    NP_177302.1
    • Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 42264 Blast hits to 12209 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 38; Plants - 41826; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26927984..26930347 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105815.4NP_177302.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177302.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C9I3
      UniProtKB/TrEMBL
      A0A178WHG4, A0A5S9WRS0
      Conserved Domains (5) summary
      PLN03081
      Location:285675
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      TIGR00756
      Location:587620
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:587614
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:176225
      PPR_2; PPR repeat family
      cl03252
      Location:614646
      PPR; PPR repeat