U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Zinc finger, C3HC4 type (RING finger) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842621, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Zinc finger, C3HC4 type (RING finger) family protein
    Primary source
    TAIR:AT1G63170
    Locus tag
    AT1G63170
    See related
    Araport:AT1G63170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16M19.7; F16M19_7
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (23425352..23427408)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene replication factor C 2 Neighboring gene UDP-D-glucose/UDP-D-galactose 4-epimerase 3 Neighboring gene Cystatin/monellin superfamily protein Neighboring gene Cystatin/monellin superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_104995.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Zinc finger, C3HC4 type (RING finger) family protein
    NP_564810.1
    • Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 9547 Blast hits to 9526 proteins in 279 species: Archae - 0; Bacteria - 6; Metazoa - 2543; Fungi - 730; Plants - 5047; Viruses - 25; Other Eukaryotes - 1196 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23425352..23427408
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104995.4 → NP_564810.1  Zinc finger, C3HC4 type (RING finger) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564810.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LDB8, Q93Z65, Q9CAM6
      UniProtKB/TrEMBL
      A0A5S9WRX5, A0A654EM50
      Conserved Domains (1) summary
      pfam13639
      Location:324 → 366
      zf-RING_2; Ring finger domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LDB8.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools