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    AGL55 AGAMOUS-like 55 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842383, updated on 18-Sep-2024

    Summary

    Official Symbol
    AGL55
    Official Full Name
    AGAMOUS-like 55
    Primary source
    TAIR:AT1G60920
    Locus tag
    AT1G60920
    See related
    Araport:AT1G60920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AGAMOUS-like 55; T7P1.6; T7P1_6
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    Genomic context

    See AGL55 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (22429692..22430361, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Rapid alkalinization factor (RALF) family protein Neighboring gene RECQ helicase L4B Neighboring gene SNF1-related protein kinase 2.10

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_104772.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
     
    enables cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    AGAMOUS-like 55
    NP_176288.1
    • AGAMOUS-like 55 (AGL55); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like-56 (TAIR:AT1G60880.1); Has 1122 Blast hits to 1122 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 175; Plants - 917; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22429692..22430361 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104772.2NP_176288.1  AGAMOUS-like 55 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176288.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ELD9, Q9C960
      Conserved Domains (1) summary
      cd00266
      Location:483
      MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...