U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    CW7 CW7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842242, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CW7
    Official Full Name
    CW7
    Primary source
    TAIR:AT1G59520
    Locus tag
    AT1G59520
    See related
    Araport:AT1G59520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30E16.4; T30E16_4
    Summary
    Encodes CW7.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CW7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (21861282..21866210)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Carbohydrate-binding protein Neighboring gene basic leucine-zipper 4 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001333852.1
    NM_001333853.1
    NM_001333854.1
    NM_104645.4
    NM_179496.2
    NM_179497.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    CW7
    NP_001319271.1
    • CW7; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2045 (InterPro:IPR019141); Has 142 Blast hits to 141 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    NP_564743.1
    • CW7; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2045 (InterPro:IPR019141); Has 144 Blast hits to 143 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    NP_849828.1
    • CW7; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2045 (InterPro:IPR019141); Has 145 Blast hits to 144 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21861282..21866210
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333852.1 → NP_001319271.1  CW7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4ICZ9, Q8W3K4
      Conserved Domains (1) summary
      pfam09741
      Location:44 → 299
      DUF2045; Uncharacterized conserved protein (DUF2045)

    2. NM_001333853.1 → NP_001321061.1  CW7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APQ0, A0A654EV62

    3. NM_104645.4 → NP_564743.1  CW7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564743.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EV62, Q9SLU1
      Conserved Domains (1) summary
      pfam09741
      Location:44 → 299
      DUF2045; Uncharacterized conserved protein (DUF2045)

    4. NM_001333854.1 → NP_001321060.1  CW7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APP8, A0A654EV62
      Conserved Domains (1) summary
      pfam09741
      Location:44 → 299
      DUF2045; Uncharacterized conserved protein (DUF2045)

    5. NM_179496.2 → NP_849827.1  CW7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849827.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4ICZ9, Q8W3K4
      Conserved Domains (1) summary
      pfam09741
      Location:44 → 299
      DUF2045; Uncharacterized conserved protein (DUF2045)

    6. NM_179497.1 → NP_849828.1  CW7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849828.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WSE6, A0A654EV62, F4ICZ7
      Conserved Domains (1) summary
      pfam09741
      Location:44 → 299
      DUF2045; Uncharacterized conserved protein (DUF2045)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools