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    Pyridoxamine 5'-phosphate oxidase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841581, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pyridoxamine 5'-phosphate oxidase family protein
    Primary source
    TAIR:AT1G51560
    Locus tag
    AT1G51560
    See related
    Araport:AT1G51560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5D21.3; F5D21_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (19119606..19122038, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Kelch repeat-containing F-box family protein Neighboring gene ncRNA Neighboring gene Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein Neighboring gene RNA-binding KH domain-containing protein Neighboring gene alpha-mannosidase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_104034.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pyridoxamine 5'-phosphate oxidase family protein
    NP_175567.1
    • Pyridoxamine 5'-phosphate oxidase family protein; FUNCTIONS IN: FMN binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002); BEST Arabidopsis thaliana protein match is: Pyridoxamine 5'-phosphate oxidase family protein (TAIR:AT3G21140.1); Has 633 Blast hits to 633 proteins in 219 species: Archae - 0; Bacteria - 353; Metazoa - 24; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19119606..19122038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104034.5 → NP_175567.1  Pyridoxamine 5'-phosphate oxidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175567.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDI8, A0A654EI43, Q8VXY3, Q9C8K8
      Conserved Domains (2) summary
      pfam10615
      Location:331 → 378
      DUF2470; Protein of unknown function (DUF2470)
      cl00381
      Location:152 → 294
      PNPOx/FlaRed_like; Pyridoxine 5'-phosphate (PNP) oxidase-like and flavin reductase-like proteins
    Nucleotide Protein
    Heading Accession and Version

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