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    ubiquitin-fold modifier-conjugating enzyme [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839644, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ubiquitin-fold modifier-conjugating enzyme
    Primary source
    TAIR:AT1G27530
    Locus tag
    AT1G27530
    See related
    Araport:AT1G27530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T17H3.3; T17H3_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (9562487..9564031, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene UvrB/UvrC domain protein (DUF3506) Neighboring gene Glycosyl hydrolase family 47 protein Neighboring gene phosphatidylinositol 3/4-kinase Neighboring gene F-box protein (DUF295)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_102517.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables UFM1 conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ufmylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin-fold modifier-conjugating enzyme
    NP_564289.1
    • CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9562487..9564031 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102517.5 → NP_564289.1  ubiquitin-fold modifier-conjugating enzyme [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564289.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H0X8, Q9SXC8
      UniProtKB/TrEMBL
      A0A178WMM0, A0A5S9W382, A0A654EE87
      Conserved Domains (1) summary
      pfam08694
      Location:8 → 163
      UFC1; Ubiquitin-fold modifier-conjugating enzyme 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SXC8.1

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