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    carboxyl-terminal proteinase, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838943, updated on 18-Sep-2024

    Summary

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    Official Full Name
    carboxyl-terminal proteinase, putative (DUF239)
    Primary source
    TAIR:AT1G23340
    Locus tag
    AT1G23340
    See related
    Araport:AT1G23340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26F24.22; F26F24_22
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (8283644..8286969, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tryptophan aminotransferase related 1 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332599.1
    NM_102183.4
    NM_202164.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    carboxyl-terminal proteinase, putative (DUF239)
    NP_173748.2
    • Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G70550.1); Has 778 Blast hits to 728 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 755; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_973893.1
    • Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G70550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8283644..8286969 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202164.1 → NP_973893.1  carboxyl-terminal proteinase, putative (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973893.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ECF1, Q8GY67
      Conserved Domains (2) summary
      pfam03080
      Location:180 → 402
      DUF239; Domain of unknown function (DUF239)
      pfam14365
      Location:61 → 167
      DUF4409; Domain of unknown function (DUF4409)

    2. NM_102183.4 → NP_173748.2  carboxyl-terminal proteinase, putative (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173748.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ECF1, Q8GY67
      Conserved Domains (2) summary
      pfam03080
      Location:180 → 402
      DUF239; Domain of unknown function (DUF239)
      pfam14365
      Location:61 → 167
      DUF4409; Domain of unknown function (DUF4409)

    3. NM_001332599.1 → NP_001321242.1  carboxyl-terminal proteinase, putative (DUF239) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ93
    Nucleotide Protein
    Heading Accession and Version

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