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    EF hand calcium-binding protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838434, updated on 18-Sep-2024

    Summary

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    Official Full Name
    EF hand calcium-binding protein family
    Primary source
    TAIR:AT1G18530
    Locus tag
    AT1G18530
    See related
    Araport:AT1G18530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25I16.13; F25I16_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (6376623..6377256)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tetraspanin Neighboring gene tetraspanin11 Neighboring gene Ribosomal protein L6 family protein Neighboring gene ATP binding microtubule motor family protein Neighboring gene BED zinc finger and hAT dimerization domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis Calmodulin-Like Proteins, CML15 and CML16 Possess Biochemical Properties Distinct from Calmodulin and Show Non-overlapping Tissue Expression Patterns. Ogunrinde A, et al. Front Plant Sci, 2017. PMID 29312414, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    EF hand calcium-binding protein family
    NP_173288.1
    • EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G25600.1); Has 21367 Blast hits to 15094 proteins in 1525 species: Archae - 2; Bacteria - 175; Metazoa - 8057; Fungi - 4921; Plants - 4996; Viruses - 2; Other Eukaryotes - 3214 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6376623..6377256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101711.2 → NP_173288.1  EF hand calcium-binding protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173288.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FZ75
      UniProtKB/TrEMBL
      A0A178W0I5, A0A5S9V0Z6, A0A654EB37
      Conserved Domains (1) summary
      PTZ00184
      Location:2 → 143
      PTZ00184; calmodulin; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZ75.1

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