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    Serinc-domain containing serine and sphingolipid biosynthesis protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838187, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Serinc-domain containing serine and sphingolipid biosynthesis protein
    Primary source
    TAIR:AT1G16180
    Locus tag
    AT1G16180
    See related
    Araport:AT1G16180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T24D18.26; T24D18_26
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (5540050..5542902)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene wall associated kinase-like 5 Neighboring gene ephrin-A3 protein Neighboring gene Rad23 UV excision repair protein family Neighboring gene coiled-coil protein Neighboring gene Protein phosphatase 2C family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001198079.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Serinc-domain containing serine and sphingolipid biosynthesis protein
    NP_001185008.1
    • Serinc-domain containing serine and sphingolipid biosynthesis protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G06170.1).
    NP_173069.1
    • Serinc-domain containing serine and sphingolipid biosynthesis protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G06170.1); Has 780 Blast hits to 770 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 127; Plants - 141; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5540050..5542902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101485.4 → NP_173069.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173069.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WG15, A0A5S9UQE0, Q9S9L9
      Conserved Domains (1) summary
      pfam03348
      Location:24 → 411
      Serinc; Serine incorporator (Serinc)

    2. NM_001198079.1 → NP_001185008.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185008.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WG15, A0A5S9UQE0, Q9S9L9
      Conserved Domains (1) summary
      pfam03348
      Location:24 → 411
      Serinc; Serine incorporator (Serinc)
    Nucleotide Protein
    Heading Accession and Version

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