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    defective in cullin neddylation protein (DUF298) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838156, updated on 18-Sep-2024

    Summary

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    Official Full Name
    defective in cullin neddylation protein (DUF298)
    Primary source
    TAIR:AT1G15860
    Locus tag
    AT1G15860
    See related
    Araport:AT1G15860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7H2.19; F7H2_19
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (5454766..5457022)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Mitochondrial glycoprotein family protein Neighboring gene golgi snare 11 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001160872.2
    NM_001198077.1
    NM_101454.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    defective in cullin neddylation protein (DUF298)
    NP_001154344.1
    • INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1); Has 784 Blast hits to 784 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 124; Plants - 115; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
    NP_001185006.1
    • INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1).
    NP_563983.4
    • CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1); Has 784 Blast hits to 784 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 124; Plants - 115; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5454766..5457022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160872.2 → NP_001154344.1  defective in cullin neddylation protein (DUF298) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154344.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMB9, A0A5S9UM81, A0A654EC77, Q7XJ64
      Conserved Domains (1) summary
      pfam03556
      Location:107 → 221
      Cullin_binding; Cullin binding

    2. NM_101454.5 → NP_563983.4  defective in cullin neddylation protein (DUF298) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563983.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMB9, A0A5S9UM81, A0A654EC77, Q7XJ64
      Conserved Domains (1) summary
      pfam03556
      Location:107 → 221
      Cullin_binding; Cullin binding

    3. NM_001198077.1 → NP_001185006.1  defective in cullin neddylation protein (DUF298) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185006.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMB9, A0A5S9UM81, F4I181
      Conserved Domains (1) summary
      pfam03556
      Location:107 → 230
      Cullin_binding; Cullin binding
    Nucleotide Protein
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