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    BPC2 basic pentacysteine 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838031, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BPC2
    Official Full Name
    basic pentacysteine 2
    Primary source
    TAIR:AT1G14685
    Locus tag
    AT1G14685
    See related
    Araport:AT1G14685
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATBPC2; basic pentacysteine 2; BASIC PENTACYSTEINE 2; BBR/BPC2; F10B6.5; F10B6_5
    Summary
    Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.
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    Genomic context

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    See BPC2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (5042240..5045556)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Endomembrane protein 70 protein family Neighboring gene early endosome antigen Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene homeobox protein 32

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Brand LH, et al. Plant Methods, 2010 Nov 25. PMID 21108821, Free PMC Article
    2. BASIC PENTACYSTEINE2 negatively regulates osmotic stress tolerance by modulating LEA4-5 expression in Arabidopsis thaliana. Li Q, et al. Plant Physiol Biochem, 2021 Nov. PMID 34710757
    3. Cell wall β-1,4-galactan regulated by the BPC1/BPC2-GALS1 module aggravates salt sensitivity in Arabidopsis thaliana. Yan J, et al. Mol Plant, 2021 Mar 1. PMID 33276159
    4. Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis. Monfared MM, et al. Plant J, 2011 Jun. PMID 21435046
    5. Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter. Meister RJ, et al. Plant J, 2004 Feb. PMID 14731261

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. BASIC PENTACYSTEINE2 negatively regulates osmotic stress tolerance by modulating LEA4-5 expression in Arabidopsis thaliana.
      Title: BASIC PENTACYSTEINE2 negatively regulates osmotic stress tolerance by modulating LEA4-5 expression in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332132.1
    NM_101336.4
    NM_179331.3
    NM_202099.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables cis-regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables cis-regulatory region sequence-specific DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific double-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription corepressor binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of response to salt stress IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of developmental process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of plant-type cell wall organization or biogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to ethylene IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    basic pentacysteine 2
    NP_563955.1
    • basic pentacysteine 2 (BPC2); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 236 Blast hits to 236 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
    NP_849662.1
    • basic pentacysteine 2 (BPC2); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 236 Blast hits to 236 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
    NP_973828.1
    • basic pentacysteine 2 (BPC2); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5042240..5045556
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101336.4 → NP_563955.1  basic pentacysteine 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563955.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2PQS1, Q9LDE2
      UniProtKB/TrEMBL
      A0A178W364, A0A7G2DVG5
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 279
      GAGA_bind; GAGA binding protein-like family

    2. NM_001332132.1 → NP_001321304.1  basic pentacysteine 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2PQS1, Q9LDE2
      UniProtKB/TrEMBL
      A0A178W364, A0A7G2DVG5
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 279
      GAGA_bind; GAGA binding protein-like family

    3. NM_179331.3 → NP_849662.1  basic pentacysteine 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849662.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2PQS1, Q9LDE2
      UniProtKB/TrEMBL
      A0A178W364, A0A7G2DVG5
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 279
      GAGA_bind; GAGA binding protein-like family

    4. NM_202099.1 → NP_973828.1  basic pentacysteine 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973828.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2PQS1, Q9LDE2
      UniProtKB/TrEMBL
      A0A178W364, A0A7G2DVG5
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 279
      GAGA_bind; GAGA binding protein-like family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LDE2.1

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