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    TRAF-type zinc finger-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837524, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TRAF-type zinc finger-like protein
    Primary source
    TAIR:AT1G09920
    Locus tag
    AT1G09920
    See related
    Araport:AT1G09920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21M12.31; F21M12_31
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (3224684..3227083, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene Rhamnogalacturonate lyase family protein Neighboring gene oligopeptide transporter 2 Neighboring gene Phosphoglycerate mutase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_100866.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRAF-type zinc finger-like protein
    NP_563857.1
    • TRAF-type zinc finger-related; BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G15420.1); Has 897 Blast hits to 860 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 570; Fungi - 106; Plants - 68; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3224684..3227083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100866.5 → NP_563857.1  TRAF-type zinc finger-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563857.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WIJ6, Q8L7A5, Q8L9U7
      Conserved Domains (1) summary
      PLN03086
      Location:9 → 127
      PLN03086; PRLI-interacting factor K; Provisional
    Nucleotide Protein
    Heading Accession and Version

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