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    GTP binding Elongation factor Tu family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837308, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GTP binding Elongation factor Tu family protein
    Primary source
    TAIR:AT1G07930
    Locus tag
    AT1G07930
    See related
    Araport:AT1G07930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6D22.31
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (2458184..2460817)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RNAligase Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene pseudo Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene pseudo Neighboring gene Surfeit locus protein 5 subunit 22 of Mediator complex Neighboring gene PDI-like 5-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ordered histone modifications are associated with transcriptional poising and activation of the phaseolin promoter. Ng DW, et al. Plant Cell, 2006 Jan. PMID 16326929, Free PMC Article
    2. Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Szponarski W, et al. Proteomics, 2004 Feb. PMID 14760709
    3. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Saracco SA, et al. Plant J, 2009 Jul. PMID 19292762, Free PMC Article
    4. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    5. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084014.1
    NM_100667.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 
    located_in plasmodesma HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    GTP binding Elongation factor Tu family protein
    NP_001077483.1
    • GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: cotyledon, male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 94933 Blast hits to 81944 proteins in 18755 species: Archae - 1142; Bacteria - 33318; Metazoa - 29343; Fungi - 15688; Plants - 2287; Viruses - 5; Other Eukaryotes - 13150 (source: NCBI BLink).
    NP_563800.1
    • GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, vacuole; EXPRESSED IN: cotyledon, male gametophyte, guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011; Bacteria - 33710; Metazoa - 21823; Fungi - 13003; Plants - 1919; Viruses - 6; Other Eukaryotes - 12810 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2458184..2460817
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100667.4 → NP_563800.1  GTP binding Elongation factor Tu family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563800.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MSE8, B9DGN1, P0DH99, P13905, Q0WL56, Q0WSD5, Q39093, Q8GTY0, Q8VZE8, Q8W4H7, Q94AD0, Q9ASU9, Q9C5L4, Q9LN13
      UniProtKB/TrEMBL
      A0A178WJC9, A0A5S9T7A6, A0A5S9YFS8
      Conserved Domains (1) summary
      PTZ00141
      Location:1 → 446
      PTZ00141; elongation factor 1- alpha; Provisional

    2. NM_001084014.1 → NP_001077483.1  GTP binding Elongation factor Tu family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077483.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YFS8, F4HUA0
      Conserved Domains (4) summary
      PTZ00141
      Location:1 → 369
      PTZ00141; elongation factor 1- alpha; Provisional
      cd01883
      Location:9 → 227
      EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
      cd03705
      Location:254 → 349
      EF1_alpha_III; Domain III of Elongation Factor 1
      cl02787
      Location:230 → 255
      Translation_Factor_II_like; Domain II of Elongation factor Tu (EF-Tu)-like proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DH99.1
    Q0WL56.2
    Q8GTY0.2
    Q8W4H7.2

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    Research Materials