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    Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837231, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
    Primary source
    TAIR:AT1G07200
    Locus tag
    AT1G07200
    See related
    Araport:AT1G07200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10K1.9; F10K1_9; SMAX1-like 6; SMXL6
    Summary
    Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (2208477..2212718, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene alternative NAD(P)H dehydrogenase 1 Neighboring gene Lon protease Neighboring gene Ribosomal protein S18 Neighboring gene O-glucosyltransferase rumi-like protein (DUF821) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Negative Roles of Strigolactone-Related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis. Li W, et al. Biomolecules, 2020 Apr 14. PMID 32295207, Free PMC Article
    2. SUPPRESSOR OF MAX2 LIKE 6, 7, and 8 Interact with DDB1 BINDING WD REPEAT DOMAIN HYPERSENSITIVE TO ABA DEFICIENT 1 to Regulate the Drought Tolerance and Target SUCROSE NONFERMENTING 1 RELATED PROTEIN KINASE 2.3 to Abscisic Acid Response in Arabidopsis. Lian Y, et al. Biomolecules, 2023 Sep 18. PMID 37759806, Free PMC Article
    3. Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation. Wang L, et al. Plant Cell, 2015 Nov. PMID 26546446, Free PMC Article
    4. SUPPRESSOR OF MORE AXILLARY GROWTH2 1 controls seed germination and seedling development in Arabidopsis. Stanga JP, et al. Plant Physiol, 2013 Sep. PMID 23893171, Free PMC Article
    5. SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis. Soundappan I, et al. Plant Cell, 2015 Nov. PMID 26546447, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Negative Roles of Strigolactone-Related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis.
      Title: Negative Roles of Strigolactone-Related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis.
    2. In Arabidopsis, D53-like SMXLs act with TPR2 to repress transcription and so allow lateral bud outgrowth but that strigolactone-induced degradation of D53-like proteins activates transcription to inhibit outgrowth. [SMXL6]
      Title: Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation.
    3. Data suggests that SMAX1 and SMXL6,7,8 repress karrikin and strigolactone signaling, respectively, and that all MAX2-dependent growth effects are mediated by degradation of SMAX1/SMXL proteins. [SMXL6]
      Title: SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001084005.3
    NM_100594.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to strigolactone IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
    NP_001077474.1
    • Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1); Has 14612 Blast hits to 14412 proteins in 2715 species: Archae - 17; Bacteria - 11575; Metazoa - 78; Fungi - 306; Plants - 572; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).
    NP_172200.2
    • Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1); Has 14609 Blast hits to 14609 proteins in 2753 species: Archae - 17; Bacteria - 11747; Metazoa - 78; Fungi - 268; Plants - 440; Viruses - 0; Other Eukaryotes - 2059 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2208477..2212718 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084005.3 → NP_001077474.1  Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077474.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LML2
      UniProtKB/TrEMBL
      A0A178WIY3, A0A5S9T2M2
      Conserved Domains (2) summary
      CHL00095
      Location:185 → 772
      clpC; Clp protease ATP binding subunit
      cd19499
      Location:617 → 782
      RecA-like_ClpB_Hsp104-like; Chaperone protein ClpB/Hsp104 subfamily

    2. NM_100594.4 → NP_172200.2  Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172200.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8RWE4
      Conserved Domains (2) summary
      COG0542
      Location:62 → 350
      ClpA; ATP-dependent Clp protease ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones]
      cl21455
      Location:106 → 213
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LML2.1

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