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    RHON1 Rho termination factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837128, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RHON1
    Official Full Name
    Rho termination factor
    Primary source
    TAIR:AT1G06190
    Locus tag
    AT1G06190
    See related
    Araport:AT1G06190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9P14.5; F9P14_5; Rho-N 1
    Summary
    Encodes a novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.
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    Genomic context

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    See RHON1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (1892231..1894194, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene myb domain protein 13 Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene ENTH/VHS/GAT family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RHON1 Co-transcriptionally Resolves R-Loops for Arabidopsis Chloroplast Genome Maintenance. Yang Z, et al. Cell Rep, 2020 Jan 7. PMID 31914390
    2. RHON1 mediates a Rho-like activity for transcription termination in plastids of Arabidopsis thaliana. Chi W, et al. Plant Cell, 2014 Dec. PMID 25480370, Free PMC Article
    3. RHON1 is a novel ribonucleic acid-binding protein that supports RNase E function in the Arabidopsis chloroplast. Stoppel R, et al. Nucleic Acids Res, 2012 Sep 1. PMID 22735703, Free PMC Article
    4. Mining the soluble chloroplast proteome by affinity chromatography. Bayer RG, et al. Proteomics, 2011 Apr. PMID 21365755, Free PMC Article
    5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RHON1 Co-transcriptionally Resolves R-Loops for Arabidopsis Chloroplast Genome Maintenance.
      Title: RHON1 Co-transcriptionally Resolves R-Loops for Arabidopsis Chloroplast Genome Maintenance.
    2. RHON1 terminates rbcL transcription using an ATP-driven mechanism similar to that of Rho of Escherichia coli.
      Title: RHON1 mediates a Rho-like activity for transcription termination in plastids of Arabidopsis thaliana.
    3. RHON1 is essential for photoautotrophic growth and together with RNE forms a distinct 800 kDa complex. [RHON1]
      Title: RHON1 is a novel ribonucleic acid-binding protein that supports RNase E function in the Arabidopsis chloroplast.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001083997.1
    NM_001331617.1
    NM_001331618.1
    NM_001331619.1
    NM_100500.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables rRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription termination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within chloroplast mRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within chloroplast rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Rho termination factor
    NP_001077466.1
    • Rho termination factor; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 63 Blast hits to 63 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 41; Viruses - 3; Other Eukaryotes - 4 (source: NCBI BLink).
    NP_563761.1
    • Rho termination factor; FUNCTIONS IN: transcription termination factor activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: transcription termination, ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6; Bacteria - 275; Metazoa - 547; Fungi - 247; Plants - 133; Viruses - 50; Other Eukaryotes - 630 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1892231..1894194 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100500.4 → NP_563761.1  Rho termination factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563761.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQM6, Q8LFT8, Q94K75, Q9LNC8
      UniProtKB/TrEMBL
      A0A654E7F0
      Conserved Domains (1) summary
      smart00959
      Location:363 → 394
      Rho_N; Rho termination factor, N-terminal domain

    2. NM_001331617.1 → NP_001320173.1  Rho termination factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM09

    3. NM_001331618.1 → NP_001320171.1  Rho termination factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM09

    4. NM_001331619.1 → NP_001320172.1  Rho termination factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM12, A0A654E7F0

    5. NM_001083997.1 → NP_001077466.1  Rho termination factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077466.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94K75
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94K75.1

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