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    ABCI18 non-intrinsic ABC protein 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839378, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABCI18
    Official Full Name
    non-intrinsic ABC protein 4
    Primary source
    TAIR:AT1G03900
    Locus tag
    AT1G03900
    See related
    Araport:AT1G03900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATNAP4; ATP-binding cassette I18; F21M11.36; NAP4; non-intrinsic ABC protein 4
    Summary
    member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.
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    Genomic context

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    See ABCI18 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (991106..993126)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cruciferin 2 Neighboring gene RmlC-like cupins superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene cactus-binding carboxy-terminal, cactin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100270.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATPase-coupled transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within transmembrane transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    non-intrinsic ABC protein 4
    NP_563693.1
    • non-intrinsic ABC protein 4 (NAP4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: extracellular transport; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: Adaptin ear-binding coat-associated protein 1 NECAP-1 (TAIR:AT3G58600.1); Has 448 Blast hits to 448 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 61; Plants - 115; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      991106..993126
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100270.4 → NP_563693.1  non-intrinsic ABC protein 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563693.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67YX5, Q681Q7, Q94B37
      UniProtKB/TrEMBL
      A0A178WMR3, A0A5S9SGU2
      Conserved Domains (1) summary
      pfam07933
      Location:12 → 175
      DUF1681; Protein of unknown function (DUF1681)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q681Q7.1

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