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    srt-47 Serpentine Receptor, class T [ Caenorhabditis elegans ]

    Gene ID: 189832, updated on 9-Dec-2024

    Summary

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    Official Symbol
    srt-47
    Official Full Name
    Serpentine Receptor, class T
    Primary source
    WormBase:WBGene00012770
    Locus tag
    CELE_Y41E3.12
    See related
    AllianceGenome:WB:WBGene00012770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Is expressed in AWC-OFF and head neurons. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See srt-47 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    5
    Sequence:
    Chromosome: IV; NC_003282.8 (15049380..15053371, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene putative elongation factor 1-beta/1-delta 2 Neighboring gene ncRNA Neighboring gene B30.2/SPRY domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. C30F12.4 influences oogenesis, fat metabolism, and lifespan in C. elegans. Wang L, et al. Protein Cell, 2016 Oct. PMID 27638466, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Serpentine Receptor, class T
    NP_502819.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      15049380..15053371 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070418.3 → NP_502819.2  Serpentine Receptor, class T [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502819.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U2H7
      Conserved Domains (1) summary
      pfam10321
      Location:3 → 311
      7TM_GPCR_Srt; Serpentine type 7TM GPCR chemoreceptor Srt
    Nucleotide Protein
    Heading Accession and Version

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