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    T05C3.2 NACHT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 188117, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T05C3.2
    Official Full Name
    NACHT domain-containing protein
    Primary source
    WormBase:WBGene00020254
    Locus tag
    CELE_T05C3.2
    See related
    AllianceGenome:WB:WBGene00020254
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human NWD2 (NACHT and WD repeat domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T05C3.2 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    26
    Sequence:
    Chromosome: V; NC_003283.11 (5493747..5503010)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Ground-like domain-containing protein Neighboring gene Carb-bd_dom_fam9 domain-containing protein;PLD phosphodiesterase domain-containing protein Neighboring gene DNaJ domain (prokaryotic heat shock protein) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    NACHT domain-containing protein
    NP_504451.3
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      5493747..5503010
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072050.3 → NP_504451.3  NACHT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504451.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16302
      Conserved Domains (6) summary
      smart00382
      Location:459 → 574
      AAA; ATPases associated with a variety of cellular activities
      COG2319
      Location:1303 → 1712
      WD40; WD40 repeat [General function prediction only]
      pfam05729
      Location:459 → 633
      NACHT; NACHT domain
      pfam13271
      Location:115 → 201
      DUF4062; Domain of unknown function (DUF4062)
      sd00039
      Location:1296 → 1332
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:1326 → 1712
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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