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    Y54E5A.5 Polysaccharide biosynthesis domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173330, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y54E5A.5
    Official Full Name
    Polysaccharide biosynthesis domain-containing protein
    Primary source
    WormBase:WBGene00013200
    Locus tag
    CELE_Y54E5A.5
    See related
    AllianceGenome:WB:WBGene00013200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Located in sarcoplasmic reticulum. Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y54E5A.5 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    2
    Sequence:
    Chromosome: I; NC_003279.8 (14707059..14707875, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Recep_L_domain domain-containing protein Neighboring gene Nucleoporin p58/p45 Neighboring gene DRBM domain-containing protein Neighboring gene B30.2/SPRY domain-containing protein;CTLH domain-containing protein Neighboring gene Conserved plasma membrane protein;Pyridoxamine 5'-phosphate oxidase;Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in sarcoplasmic reticulum HDA PubMed 

    General protein information

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    Preferred Names
    Polysaccharide biosynthesis domain-containing protein
    NP_493553.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      14707059..14707875 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_061152.6 → NP_493553.1  Polysaccharide biosynthesis domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_493553.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XWK2
      Conserved Domains (1) summary
      pfam04669
      Location:16 → 137
      Polysacc_synt_4; Polysaccharide biosynthesis
    Nucleotide Protein
    Heading Accession and Version

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