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    sqt-1 Cuticle collagen sqt-1 [ Caenorhabditis elegans ]

    Gene ID: 174731, updated on 9-Dec-2024

    Summary

    Official Symbol
    sqt-1
    Official Full Name
    Cuticle collagen sqt-1
    Primary source
    WormBase:WBGene00005016
    Locus tag
    CELE_B0491.2
    See related
    AllianceGenome:WB:WBGene00005016
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    A structural constituent of collagen and cuticulin-based cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See sqt-1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003280.10 (11336693..11337837, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene tRNA-Ala Neighboring gene ncRNA Neighboring gene tRNA-Ala Neighboring gene Regulator of microtubule dynamics protein 1 Neighboring gene Neurotransmitter-gated ion-channel ligand-binding domain-containing protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    Cuticle collagen sqt-1
    NP_001369874.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      11336693..11337837 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001383951.2NP_001369874.1  Cuticle collagen sqt-1 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P12114, Q17509
      Conserved Domains (3) summary
      smart01088
      Location:857
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain
      PHA03169
      Location:132293
      PHA03169; hypothetical protein; Provisional
      pfam01391
      Location:170225
      Collagen; Collagen triple helix repeat (20 copies)