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    ZC13.1 RING-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 180437, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ZC13.1
    Official Full Name
    RING-type domain-containing protein
    Primary source
    WormBase:WBGene00022502
    Locus tag
    CELE_ZC13.1
    See related
    AllianceGenome:WB:WBGene00022502
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of ERAD pathway. Predicted to be located in membrane. Is expressed in intestine; nervous system; and pharynx. Orthologous to human RNFT1 (ring finger protein, transmembrane 1) and RNFT2 (ring finger protein, transmembrane 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See ZC13.1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    10
    Sequence:
    Chromosome: X; NC_003284.9 (877239..879884)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene tRNA-Tyr Neighboring gene Lethal giant larvae homologue 2 domain-containing protein Neighboring gene Putative serine protease F56F10.1 Neighboring gene Transmembrane protein Neighboring gene MAM domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin protein ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of ERAD pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RING-type domain-containing protein
    NP_001024970.1
    • Confirmed by transcript evidence
    NP_001360027.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      877239..879884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001029799.6 → NP_001024970.1  RING-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024970.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7JNM2
      Conserved Domains (1) summary
      cd16532
      Location:336 → 375
      RING-HC_RNFT1_like; RING finger, HC subclass, found in RING finger and transmembrane domain-containing protein RNFT1, RNFT2, and similar proteins

    2. NM_001373216.1 → NP_001360027.1  RING-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZZ7
    Nucleotide Protein
    Heading Accession and Version

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