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    cut-5 Cuticlin-5 [ Caenorhabditis elegans ]

    Gene ID: 187677, updated on 9-Dec-2024

    Summary

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    Official Symbol
    cut-5
    Official Full Name
    Cuticlin-5
    Primary source
    WormBase:WBGene00011104
    Locus tag
    CELE_R07E3.3
    See related
    AllianceGenome:WB:WBGene00011104
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Predicted to be located in plasma membrane. Is expressed in seam cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See cut-5 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    9
    Sequence:
    Chromosome: X; NC_003284.9 (10333858..10338200, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Phospholipid/glycerol acyltransferase domain-containing protein Neighboring gene ADP/ATP translocase Neighboring gene ncRNA Neighboring gene Glycine Rich Secreted Protein Neighboring gene Papain family cysteine protease;Pept_C1 domain-containing protein Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Zona Pellucida domain containing proteins, CUT-1, CUT-3 and CUT-5, play essential roles in the development of the larval alae in Caenorhabditis elegans. Sapio MR, et al. Dev Biol, 2005 Jun 1. PMID 15936343
    2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cuticlin-5
    NP_001257099.1
    • Confirmed by transcript evidence
    NP_001257100.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      10333858..10338200 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001270171.3 → NP_001257100.1  Cuticlin-5 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257100.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D0VWM7, Q21808
      Conserved Domains (1) summary
      cl27758
      Location:53 → 290
      Zona_pellucida; Zona pellucida-like domain

    2. NM_001270170.4 → NP_001257099.1  Cuticlin-5 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257099.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D0VWM7
      Conserved Domains (1) summary
      smart00241
      Location:31 → 274
      ZP; Zona pellucida (ZP) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q21808.3

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