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    clc-9 CLaudin-like in Caenorhabditis [ Caenorhabditis elegans ]

    Gene ID: 188130, updated on 9-Dec-2024

    Summary

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    Official Symbol
    clc-9
    Official Full Name
    CLaudin-like in Caenorhabditis
    Primary source
    WormBase:WBGene00011479
    Locus tag
    CELE_T05E11.2
    See related
    AllianceGenome:WB:WBGene00011479
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See clc-9 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_003282.8 (11112941..11116755)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Small ribosomal subunit protein uS7 Neighboring gene ncRNA Neighboring gene Intramembrane protease 2 Neighboring gene Endoplasmin homolog Neighboring gene DNA topoisomerase (ATP-hydrolyzing);Meiotic recombination protein spo-11 Neighboring gene SWI/SNF chromatin remodeling complex core catalytic subunit swsn-4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Changes in Caenorhabditis elegans gene expression following exposure to Photorhabdus luminescens strain TT01. Hoinville ME, et al. Dev Comp Immunol, 2018 May. PMID 29203330
    2. The embryonic muscle transcriptome of Caenorhabditis elegans. Fox RM, et al. Genome Biol, 2007. PMID 17848203, Free PMC Article
    3. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    CLaudin-like in Caenorhabditis
    NP_001129867.1
    • Confirmed by transcript evidence;
      Product from WormBase gene class clc
    NP_502078.3
    • Confirmed by transcript evidence;
      Product from WormBase gene class clc

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      11112941..11116755
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001136395.2 → NP_001129867.1  CLaudin-like in Caenorhabditis [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001129867.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3GWC2

    2. NM_069677.4 → NP_502078.3  CLaudin-like in Caenorhabditis [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502078.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22234
    Nucleotide Protein
    Heading Accession and Version

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