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    trap-1 Translocon-associated protein subunit alpha [ Caenorhabditis elegans ]

    Gene ID: 171865, updated on 9-Dec-2024

    Summary

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    Official Symbol
    trap-1
    Official Full Name
    Translocon-associated protein subunit alpha
    Primary source
    WormBase:WBGene00022122
    Locus tag
    CELE_Y71F9AM.6
    See related
    AllianceGenome:WB:WBGene00022122
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SSR1 (signal sequence receptor subunit 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See trap-1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003279.8 (2928395..2929628)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Poly [ADP-ribose] polymerase;Poly [ADP-ribose] polymerase 1 Neighboring gene ncRNA Neighboring gene tRNA (guanine(10)-N2)-methyltransferase homolog Neighboring gene NTF2-related export protein Neighboring gene Conserved oligomeric Golgi complex subunit 3;Conserved oligomeric Golgi complex subunit 3 C-terminal domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Translocon-associated protein subunit alpha
    NP_491076.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      2928395..2929628
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058675.6 → NP_491076.1  Translocon-associated protein subunit alpha [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491076.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95XT5
      Conserved Domains (1) summary
      pfam03896
      Location:16 → 251
      TRAP_alpha; Translocon-associated protein (TRAP), alpha subunit
    Nucleotide Protein
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