nhr-79 Nuclear hormone receptor family member nhr-79;Nuclear receptor domain-containing protein [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: nhr-79
Official Full Name: Nuclear hormone receptor family member nhr-79;Nuclear receptor domain-containing protein
Primary source: WormBase:WBGene00003669
Locus tag: CELE_T26H2.9
See related: AllianceGenome:WB:WBGene00003669
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in several structures, including Eala; Ealaa; Ealp; amphid neurons; and intestine. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See nhr-79 in Genome Data Viewer

Location:: chromosome: V

Exon count:: 11

Sequence:: Chromosome: V; NC_003283.11 (19207676..19211895, complement)

Chromosome V - NC_003283.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Nuclear receptors NHR-49 and NHR-79 promote peroxisome proliferation to compensate for aldehyde dehydrogenase deficiency in C. elegans.
Title: Nuclear receptors NHR-49 and NHR-79 promote peroxisome proliferation to compensate for aldehyde dehydrogenase deficiency in C. elegans.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

T26H2.9 (e-PCR)
- UniSTS:315107

STS5-255 (e-PCR)
- UniSTS:242422

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Nuclear hormone receptor family member nhr-79;Nuclear receptor domain-containing protein

NP_001360177.1

Confirmed by transcript evidence

NP_507734.4

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003283.11 Reference assembly

Range

19207676..19211895 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_075333.9 → NP_507734.4 Nuclear hormone receptor family member nhr-79 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_507734.4

Status: REVIEWED

UniProtKB/Swiss-Prot

O18141

UniProtKB/TrEMBL

Q9BJK8

Conserved Domains (2) summary

smart00399
Location:5 → 77

ZnF_C4; c4 zinc finger in nuclear hormone receptors

smart00430
Location:253 → 429

HOLI; Ligand binding domain of hormone receptors
NM_001373193.1 → NP_001360177.1 Nuclear receptor domain-containing protein [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

J7SF88

Conserved Domains (1) summary

smart00399
Location:5 → 77

ZnF_C4; c4 zinc finger in nuclear hormone receptors