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    • Showing Current items.

    ipla-5 PNPLA domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 186763, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ipla-5
    Official Full Name
    PNPLA domain-containing protein
    Primary source
    WormBase:WBGene00019229
    Locus tag
    CELE_H23L24.2
    See related
    AllianceGenome:WB:WBGene00019229
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in lipid metabolic process. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See ipla-5 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    9
    Sequence:
    Chromosome: IV; NC_003282.8 (8715247..8717900)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Poly(ADP-ribose) glycohydrolase 2 Neighboring gene Phosphatidylinositol-glycan biosynthesis class X protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Roles of acidic phospholipids and nucleotides in regulating membrane binding and activity of a calcium-independent phospholipase A2 isoform. Morrison K, et al. J Biol Chem, 2012 Nov 9. PMID 23007400, Free PMC Article
    2. Comparative genomics and functional study of lipid metabolic genes in Caenorhabditis elegans. Zhang Y, et al. BMC Genomics, 2013 Mar 12. PMID 23496871, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PNPLA domain-containing protein
    NP_501497.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      8715247..8717900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069096.3 → NP_501497.2  PNPLA domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501497.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N5L3
      Conserved Domains (4) summary
      cd07212
      Location:141 → 455
      Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
      cd00204
      Location:21 → 90
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam13857
      Location:44 → 92
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:49 → 83
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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