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    W04B5.3 Galectin [ Caenorhabditis elegans ]

    Gene ID: 175361, updated on 9-Dec-2024

    Summary

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    Official Symbol
    W04B5.3
    Official Full Name
    Galectin
    Primary source
    WormBase:WBGene00021020
    Locus tag
    CELE_W04B5.3
    See related
    AllianceGenome:WB:WBGene00021020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See W04B5.3 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    13
    Sequence:
    Chromosome: III; NC_003281.10 (2418514..2423912)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Sterol 4-C-methyltransferase strm-1 Neighboring gene 39S ribosomal protein L30, mitochondrial Neighboring gene Protein kinase domain-containing protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Uncharacterized protein Neighboring gene pseudo Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    2. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Galectin
    NP_001359967.1
    • Confirmed by transcript evidence
    NP_741096.1
    • Confirmed by transcript evidence
    NP_741097.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      2418514..2423912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_171083.7 → NP_741096.1  Galectin [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741096.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZL0
      Conserved Domains (2) summary
      smart00276
      Location:11 → 139
      GLECT; Galectin
      PHA03247
      Location:137 → 390
      PHA03247; large tegument protein UL36; Provisional

    2. NM_001373857.1 → NP_001359967.1  Galectin [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZL1
      Conserved Domains (2) summary
      smart00276
      Location:11 → 139
      GLECT; Galectin
      PHA03247
      Location:137 → 337
      PHA03247; large tegument protein UL36; Provisional

    3. NM_171084.3 → NP_741097.1  Galectin [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741097.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9UA61
      Conserved Domains (2) summary
      smart00276
      Location:11 → 139
      GLECT; Galectin
      PHA03247
      Location:137 → 390
      PHA03247; large tegument protein UL36; Provisional
    Nucleotide Protein
    Heading Accession and Version

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