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    Y56A3A.7 Homeobox protein cut-like [ Caenorhabditis elegans ]

    Gene ID: 176629, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y56A3A.7
    Official Full Name
    Homeobox protein cut-like
    Primary source
    WormBase:WBGene00013228
    Locus tag
    CELE_Y56A3A.7
    See related
    AllianceGenome:WB:WBGene00013228
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA binding activity. Is expressed in excretory system; gonad; hypodermis; intestine; and pharynx. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y56A3A.7 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    12
    Sequence:
    Chromosome: III; NC_003281.10 (11933990..11947019, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene DUF1279 domain-containing protein Neighboring gene Nitrilase homolog Neighboring gene dolichol kinase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA topoisomerase 3 Neighboring gene C2H2-type domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Homeobox protein cut-like
    NP_001122735.1
    • Confirmed by transcript evidence
    NP_499557.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      11933990..11947019 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067156.6 → NP_499557.1  Homeobox protein cut-like [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499557.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U222
      Conserved Domains (1) summary
      COG1196
      Location:12 → 337
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. NM_001129263.5 → NP_001122735.1  Homeobox protein cut-like [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122735.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A7DTF5
      Conserved Domains (1) summary
      cl03075
      Location:107 → 253
      GrpE; nucleotide exchange factor GrpE
    Nucleotide Protein
    Heading Accession and Version

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