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    npp-27 C3HC-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 177578, updated on 9-Dec-2024

    Summary

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    Official Symbol
    npp-27
    Official Full Name
    C3HC-type domain-containing protein
    Primary source
    WormBase:WBGene00016794
    Locus tag
    CELE_C49H3.9
    See related
    AllianceGenome:WB:WBGene00016794
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable zinc ion binding activity. Predicted to be located in nucleus. Orthologous to human ZC3HC1 (zinc finger C3HC-type containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See npp-27 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_003282.8 (7907093..7909474, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Bifunctional purine biosynthesis protein ATIC;Phosphoribosylaminoimidazolecarboxamide formyltransferase Neighboring gene ncRNA Neighboring gene lysozyme Neighboring gene Actin-related protein 10 Neighboring gene Cortactin-binding protein-2 N-terminal domain-containing protein Neighboring gene CCR4-NOT transcription complex subunit 4 Neighboring gene Sm domain-containing protein Neighboring gene Exportin-T

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of Nuclear Pore Complexes in Caenorhabditis elegans by Live Imaging and Functional Genomics. de la Cruz Ruiz P, et al. Methods Mol Biol, 2022. PMID 35412238
    2. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    C3HC-type domain-containing protein
    NP_501317.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7907093..7909474 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068916.6 → NP_501317.1  C3HC-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501317.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9GYR0
      Conserved Domains (1) summary
      pfam07967
      Location:48 → 179
      zf-C3HC; C3HC zinc finger-like
    Nucleotide Protein
    Heading Accession and Version

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