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    M04C3.2 SNF2 N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 180274, updated on 9-Dec-2024

    Summary

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    Official Symbol
    M04C3.2
    Official Full Name
    SNF2 N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00010851
    Locus tag
    CELE_M04C3.2
    See related
    AllianceGenome:WB:WBGene00010851
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ATP binding activity and ATP-dependent chromatin remodeler activity. Involved in innate immune response. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See M04C3.2 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (19445873..19448905, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene BACK domain-containing protein;NR LBD domain-containing protein Neighboring gene SNF2 N-terminal domain-containing protein Neighboring gene Glutaredoxin;Spiroplasma plectrovirus-related protein;Uncharacterized protein Neighboring gene SNF2 N-terminal domain-containing protein Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in innate immune response HEP PubMed 

    General protein information

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    Preferred Names
    SNF2 N-terminal domain-containing protein
    NP_001256858.1
    • Confirmed by transcript evidence
    NP_001370286.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      19445873..19448905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269929.2 → NP_001256858.1  SNF2 N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256858.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G1K104
      Conserved Domains (1) summary
      cl28899
      Location:218 → 441
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    2. NM_001383497.1 → NP_001370286.1  SNF2 N-terminal domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      G1K101
      Conserved Domains (1) summary
      cl28899
      Location:218 → 441
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    Nucleotide Protein
    Heading Accession and Version

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