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    T20G5.9 Partner of Y14 and mago [ Caenorhabditis elegans ]

    Gene ID: 188661, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T20G5.9
    Official Full Name
    Partner of Y14 and mago
    Primary source
    WormBase:WBGene00011871
    Locus tag
    CELE_T20G5.9
    See related
    AllianceGenome:WB:WBGene00011871
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in exon-exon junction complex disassembly. Predicted to be part of exon-exon junction complex. Predicted to be active in cytoplasm. Orthologous to human PYM1 (PYM homolog 1, exon junction complex associated factor). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T20G5.9 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    4
    Sequence:
    Chromosome: III; NC_003281.10 (10209840..10211093)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene protein of unknown function DB domain-containing protein Neighboring gene ncRNA Neighboring gene putative clathrin heavy chain 1 Neighboring gene Biogenesis of lysosome-related organelles complex 1 subunit 1 Neighboring gene Bestrophin homolog;Bestrophin homolog 18 Neighboring gene putative citrate synthase, mitochondrial Neighboring gene DRBM domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in exon-exon junction complex disassembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in exon-exon junction complex disassembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of exon-exon junction complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Partner of Y14 and mago
    NP_499261.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      10209840..10211093
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066860.3 → NP_499261.2  Partner of Y14 and mago [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499261.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22615
      Conserved Domains (1) summary
      pfam09282
      Location:27 → 53
      Mago-bind; Mago binding
    Nucleotide Protein
    Heading Accession and Version

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