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    Y97E10AR.6 BSD domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179179, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y97E10AR.6
    Official Full Name
    BSD domain-containing protein
    Primary source
    WormBase:WBGene00022401
    Locus tag
    CELE_Y97E10AR.6
    See related
    AllianceGenome:WB:WBGene00022401
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in cytoplasm. Orthologous to human BSDC1 (BSD domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y97E10AR.6 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (8012397..8013951, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Ragulator complex protein LAMTOR2 homolog Neighboring gene DNA-directed RNA polymerase II subunit rpb-9 Neighboring gene Serine palmitoyltransferase 2 Neighboring gene Enoyl-CoA hydratase Neighboring gene Poly(A) RNA polymerase mitochondrial-like central palm domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    BSD domain-containing protein
    NP_505063.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      8012397..8013951 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072662.7 → NP_505063.2  BSD domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q965R9
      Conserved Domains (1) summary
      pfam03909
      Location:216 → 272
      BSD; BSD domain
    Nucleotide Protein
    Heading Accession and Version

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