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    mlh-1 DNA mismatch repair protein S5 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 176783, updated on 9-Dec-2024

    Summary

    Official Symbol
    mlh-1
    Official Full Name
    DNA mismatch repair protein S5 domain-containing protein
    Primary source
    WormBase:WBGene00003373
    Locus tag
    CELE_T28A8.7
    See related
    AllianceGenome:WB:WBGene00003373
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ATP hydrolysis activity. Predicted to be involved in mismatch repair. Predicted to be located in nucleus. Predicted to be part of MutLalpha complex. Human ortholog(s) of this gene implicated in Lynch syndrome (multiple); gastrointestinal system cancer (multiple); lung cancer; mismatch repair cancer syndrome; and sporadic breast cancer. Orthologous to human MLH1 (mutL homolog 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See mlh-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    8
    Sequence:
    Chromosome: III; NC_003281.10 (13509301..13514570, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene SPK domain-containing protein Neighboring gene SPK domain-containing protein Neighboring gene Coronin-7 Neighboring gene tRNA Neighboring gene tRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ATP hydrolysis activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables mismatched DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mismatch repair IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in mismatch repair IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of MutLalpha complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in intracellular organelle IEA
    Inferred from Electronic Annotation
    more info
     
    part_of mismatch repair complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    DNA mismatch repair protein S5 domain-containing protein
    NP_499796.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      13509301..13514570 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067395.7NP_499796.2  DNA mismatch repair protein S5 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499796.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XU10
      Conserved Domains (2) summary
      TIGR00585
      Location:2316
      mutl; DNA mismatch repair protein MutL
      pfam16413
      Location:501756
      Mlh1_C; DNA mismatch repair protein Mlh1 C-terminus