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    nhr-228 NR LBD domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 188977, updated on 2-Nov-2024

    Summary

    Official Symbol
    nhr-228
    Official Full Name
    NR LBD domain-containing protein
    Primary source
    WormBase:WBGene00020852
    Locus tag
    CELE_T27B7.6
    See related
    AllianceGenome:WB:WBGene00020852
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in head neurons; intestine; pharynx; and tail neurons. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See nhr-228 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    7
    Sequence:
    Chromosome: V; NC_003283.11 (2281759..2284963)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene NR LBD domain-containing protein;Nuclear hormone receptor family member nhr-59 Neighboring gene DUF38 domain-containing protein Neighboring gene Nuclear receptor domain-containing protein Neighboring gene NR LBD domain-containing protein

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    NR LBD domain-containing protein
    NP_001041172.1
    • Confirmed by transcript evidence
    NP_001041173.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      2281759..2284963
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001047707.6NP_001041172.1  NR LBD domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041172.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L0M9
      Conserved Domains (2) summary
      smart00399
      Location:1376
      ZnF_C4; c4 zinc finger in nuclear hormone receptors
      pfam00104
      Location:167377
      Hormone_recep; Ligand-binding domain of nuclear hormone receptor
    2. NM_001047708.3NP_001041173.1  NR LBD domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041173.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7E2K1
      Conserved Domains (1) summary
      pfam00104
      Location:95305
      Hormone_recep; Ligand-binding domain of nuclear hormone receptor

    RNA

    1. NR_133581.1 RNA Sequence

      Status: REVIEWED

    2. NR_133582.1 RNA Sequence

      Status: REVIEWED