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    ZK1055.7 Protein F37C4.5 [ Caenorhabditis elegans ]

    Gene ID: 179051, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ZK1055.7
    Official Full Name
    Protein F37C4.5
    Primary source
    WormBase:WBGene00022848
    Locus tag
    CELE_ZK1055.7
    See related
    AllianceGenome:WB:WBGene00022848
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in innate immune response. Predicted to be active in mitochondrion. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See ZK1055.7 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (6602720..6605375, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nucleotide-diphospho-sugar transferase domain-containing protein Neighboring gene HoloCentric chromosome binding Protein Neighboring gene DUF4139 domain-containing protein;Protein F37C4.5;Transposase Neighboring gene HAT C-terminal dimerization domain-containing protein Neighboring gene ncRNA Neighboring gene Cathepsin B-like cysteine proteinase 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
    2. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
    3. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Marnik EA, et al. Genetics, 2019 Nov. PMID 31506335, Free PMC Article
    4. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    5. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response HEP PubMed 
    Component Evidence Code Pubs
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Protein F37C4.5
    NP_504680.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      6602720..6605375 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072279.5 → NP_504680.1  Protein F37C4.5 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504680.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O76449
      Conserved Domains (1) summary
      TIGR02231
      Location:16 → 565
      TIGR02231; conserved hypothetical protein
    Nucleotide Protein
    Heading Accession and Version

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