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    F01F1.15 DUF3456 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175824, updated on 2-Nov-2024

    Summary

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    Official Symbol
    F01F1.15
    Official Full Name
    DUF3456 domain-containing protein
    Primary source
    WormBase:WBGene00017169
    Locus tag
    CELE_F01F1.15
    See related
    AllianceGenome:WB:WBGene00017169
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in endoplasmic reticulum. Is expressed in intestine; pharynx; and rectal gland cell. Orthologous to human CNPY2 (canopy FGF signaling regulator 2). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See F01F1.15 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    4
    Sequence:
    Chromosome: III; NC_003281.10 (5868590..5869529, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Peptidase S9 prolyl oligopeptidase catalytic domain-containing protein Neighboring gene Aspartyl aminopeptidase Neighboring gene FYVE-type domain-containing protein Neighboring gene mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Neighboring gene PAP-associated domain-containing protein Neighboring gene MIF4G domain-containing protein Neighboring gene Fructose-bisphosphate aldolase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DUF3456 domain-containing protein
    NP_001379735.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5868590..5869529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001392112.1 → NP_001379735.1  DUF3456 domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95QN1
      Conserved Domains (1) summary
      pfam11938
      Location:26 → 156
      DUF3456; TLR4 regulator and MIR-interacting MSAP
    Nucleotide Protein
    Heading Accession and Version

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