C05D9.3 Integrin beta epidermal growth factor-like domain-containing protein;putative integrin beta-like protein C05D9.3 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: C05D9.3
Official Full Name: Integrin beta epidermal growth factor-like domain-containing protein;putative integrin beta-like protein C05D9.3
Primary source: WormBase:WBGene00015472
Locus tag: CELE_C05D9.3
See related: AllianceGenome:WB:WBGene00015472
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be involved in integrin-mediated signaling pathway. Located in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See C05D9.3 in Genome Data Viewer

Location:: chromosome: X

Exon count:: 12

Sequence:: Chromosome: X; NC_003284.9 (1111903..1116855)

Chromosome X - NC_003284.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

C05D9.3 (e-PCR)
- UniSTS:321909

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Process	Evidence Code	Pubs
involved_in integrin-mediated signaling pathway	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	HDA more info	PubMed

General protein information

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Preferred Names: Integrin beta epidermal growth factor-like domain-containing protein;putative integrin beta-like protein C05D9.3

NP_001360655.1

Confirmed by transcript evidence

NP_508212.3

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003284.9 Reference assembly

Range

1111903..1116855

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_075811.8 → NP_508212.3 putative integrin beta-like protein C05D9.3 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_508212.3

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9GYK2

Conserved Domains (1) summary

cl00057
Location:32 → 123

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
NM_001373220.3 → NP_001360655.1 Integrin beta epidermal growth factor-like domain-containing protein [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

A0A4V0IN84

Conserved Domains (2) summary

pfam18372
Location:219 → 247

I-EGF_1; Integrin beta epidermal growth factor like domain 1

cl00057
Location:32 → 123

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...