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    W08G11.3 Trichohyalin [ Caenorhabditis elegans ]

    Gene ID: 189304, updated on 18-Sep-2024

    Summary

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    Official Symbol
    W08G11.3
    Official Full Name
    Trichohyalin
    Primary source
    WormBase:WBGene00012347
    Locus tag
    CELE_W08G11.3
    See related
    AllianceGenome:WB:WBGene00012347
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See W08G11.3 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    10
    Sequence:
    Chromosome: V; NC_003283.11 (16367681..16372125)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene DUF268 domain-containing protein Neighboring gene Serine/threonine-protein phosphatase 2A regulatory subunit pptr-1 Neighboring gene ncRNA Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Major sperm protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Trichohyalin
    NP_001041179.1
    • Confirmed by transcript evidence
    NP_001041180.1
    • Confirmed by transcript evidence
    NP_001360579.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      16367681..16372125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001047714.5 → NP_001041179.1  Trichohyalin [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041179.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q2XMY4
      Conserved Domains (2) summary
      COG1196
      Location:69 → 372
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05518
      Location:373 → 466
      Totivirus_coat; Totivirus coat protein

    2. NM_001373172.2 → NP_001360579.1  Trichohyalin [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A486WYQ4
      Conserved Domains (1) summary
      COG1196
      Location:69 → 374
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. NM_001047715.5 → NP_001041180.1  Trichohyalin [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041180.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q2XMY3
      Conserved Domains (2) summary
      COG1196
      Location:70 → 373
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05518
      Location:374 → 467
      Totivirus_coat; Totivirus coat protein
    Nucleotide Protein
    Heading Accession and Version

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