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    T04F3.1 1-aminocyclopropane-1-carboxylate synthase [ Caenorhabditis elegans ]

    Gene ID: 179608, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T04F3.1
    Official Full Name
    1-aminocyclopropane-1-carboxylate synthase
    Primary source
    WormBase:WBGene00011436
    Locus tag
    CELE_T04F3.1
    See related
    AllianceGenome:WB:WBGene00011436
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable transaminase activity. Predicted to be involved in amino acid metabolic process. Orthologous to human ACCS (1-aminocyclopropane-1-carboxylate synthase homolog (inactive)) and ACCSL (1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T04F3.1 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    17
    Sequence:
    Chromosome: V; NC_003283.11 (11740065..11754111)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transaminase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in 1-aminocyclopropane-1-carboxylate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in amino acid metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    1-aminocyclopropane-1-carboxylate synthase
    NP_001256363.1
    • Confirmed by transcript evidence
    NP_001256364.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      11740065..11754111
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269434.4 → NP_001256363.1  1-aminocyclopropane-1-carboxylate synthase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256363.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EE32
      Conserved Domains (3) summary
      cd00609
      Location:3076 → 3444
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PTZ00121
      Location:1134 → 1515
      PTZ00121; MAEBL; Provisional
      pfam02463
      Location:1346 → 2197
      SMC_N; RecF/RecN/SMC N terminal domain

    2. NM_001269435.3 → NP_001256364.1  1-aminocyclopropane-1-carboxylate synthase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256364.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EGD0
      Conserved Domains (3) summary
      cd00609
      Location:3009 → 3377
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PTZ00121
      Location:1067 → 1448
      PTZ00121; MAEBL; Provisional
      pfam02463
      Location:1279 → 2130
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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