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    gyg-1 Glycogenin-1 [ Caenorhabditis elegans ]

    Gene ID: 180644, updated on 9-Dec-2024

    Summary

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    Official Symbol
    gyg-1
    Official Full Name
    Glycogenin-1
    Primary source
    WormBase:WBGene00006863
    Locus tag
    CELE_F56B6.4
    See related
    AllianceGenome:WB:WBGene00006863
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable glycosyltransferase activity. Predicted to be involved in glycogen biosynthetic process. Located in striated muscle dense body. Is expressed in several structures, including body wall musculature; hypodermis; intestine; pharynx; and vulval muscle. Orthologous to human GYG2 (glycogenin 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See gyg-1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    8
    Sequence:
    Chromosome: X; NC_003284.9 (3537635..3540943)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene ncRNA Neighboring gene CC domain-containing protein Neighboring gene C2 domain-containing protein;RGS domain-containing protein;Regulator of G-protein signaling rgs-7 Neighboring gene Vitellogenin-4 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structural basis for the recruitment of glycogen synthase by glycogenin. Zeqiraj E, et al. Proc Natl Acad Sci U S A, 2014 Jul 15. PMID 24982189, Free PMC Article
    2. Characterization of regions of the Caenorhabditis elegans X chromosome containing vitellogenin genes. Heine U, et al. J Mol Biol, 1986 Apr 5. PMID 3735423
    3. High qualitative and quantitative conservation of alternative splicing in Caenorhabditis elegans and Caenorhabditis briggsae. Rukov JL, et al. Mol Biol Evol, 2007 Apr. PMID 17272679
    4. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    5. Antagonistic fungal enterotoxins intersect at multiple levels with host innate immune defences. Zhang X, et al. PLoS Genet, 2021 Jun. PMID 34166401, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables glycogenin glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in glycogen biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in striated muscle dense body HDA PubMed 

    General protein information

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    Preferred Names
    Glycogenin-1
    NP_508608.1
    • Confirmed by transcript evidence
    NP_508609.1
    • Confirmed by transcript evidence
    NP_741749.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      3537635..3540943
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_171944.9 → NP_741749.1  Glycogenin-1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741749.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      H2KYQ5
      Conserved Domains (2) summary
      cd02537
      Location:3 → 238
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
      COG1442
      Location:6 → 220
      RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]

    2. NM_076207.8 → NP_508608.1  Glycogenin-1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_508608.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      H2KYQ5, H2KYQ6, Q95Q50
      Conserved Domains (2) summary
      cd02537
      Location:3 → 238
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
      COG1442
      Location:6 → 220
      RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]

    3. NM_076208.7 → NP_508609.1  Glycogenin-1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_508609.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      H2KYQ5
      Conserved Domains (2) summary
      cd02537
      Location:3 → 238
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
      COG1442
      Location:6 → 220
      RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    H2KYQ5.1

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