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    F21D5.7 Signal recognition particle 54 kDa protein [ Caenorhabditis elegans ]

    Gene ID: 259584, updated on 9-Dec-2024

    Summary

    Official Symbol
    F21D5.7
    Official Full Name
    Signal recognition particle 54 kDa protein
    Primary source
    WormBase:WBGene00009012
    Locus tag
    CELE_F21D5.7
    See related
    AllianceGenome:WB:WBGene00009012
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable 7S RNA binding activity and endoplasmic reticulum signal peptide binding activity. Predicted to contribute to GTPase activity. Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, translocation. Predicted to be located in endoplasmic reticulum. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in severe congenital neutropenia 8. Orthologous to human SRP54 (signal recognition particle 54). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See F21D5.7 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    8
    Sequence:
    Chromosome: IV; NC_003282.8 (8741495..8743704, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Small ribosomal subunit protein mS33 Neighboring gene Ribonuclease H2 subunit B wHTH domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Poly(ADP-ribose) glycohydrolase 1;poly(ADP-ribose) glycohydrolase

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables 7S RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables 7S RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    contributes_to GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables endoplasmic reticulum signal peptide binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    part_of signal recognition particle IEA
    Inferred from Electronic Annotation
    more info
     
    part_of signal recognition particle, endoplasmic reticulum targeting IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of signal recognition particle, endoplasmic reticulum targeting IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Signal recognition particle 54 kDa protein
    NP_501507.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      8741495..8743704 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069106.7NP_501507.1  Signal recognition particle 54 kDa protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501507.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EE80
      Conserved Domains (4) summary
      TIGR01425
      Location:2428
      SRP54_euk; signal recognition particle protein SRP54
      pfam00448
      Location:102294
      SRP54; SRP54-type protein, GTPase domain
      pfam02881
      Location:683
      SRP54_N; SRP54-type protein, helical bundle domain
      pfam02978
      Location:326428
      SRP_SPB; Signal peptide binding domain