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    F53A9.6 Spore coat protein [ Caenorhabditis elegans ]

    Gene ID: 186145, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F53A9.6
    Official Full Name
    Spore coat protein
    Primary source
    WormBase:WBGene00018729
    Locus tag
    CELE_F53A9.6
    See related
    AllianceGenome:WB:WBGene00018729
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in innate immune response. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F53A9.6 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    1
    Sequence:
    Chromosome: X; NC_003284.9 (8713544..8713804, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Protein kreg-1 Neighboring gene Spore coat protein Neighboring gene Threonine dehydratase Neighboring gene Zinc transporter Slc39a7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response HEP PubMed 
    involved_in response to stress IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in stress response to metal ion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Spore coat protein
    NP_509475.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      8713544..8713804 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_077074.7 → NP_509475.1  Spore coat protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509475.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20691
    Nucleotide Protein
    Heading Accession and Version

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